Information for 3-CCACTAGGTGGCG (Motif 6)

A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
Reverse Opposite:
A G T C A C T G A G T C A T G C G T C A A G T C A G T C C G A T T G C A A T C G A C G T A C T G A C T G
p-value:1e-12
log p-value:-2.882e+01
Information Content per bp:1.814
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif49.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets53.4 +/- 24.3bp
Average Position of motif in Background48.7 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGTGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGTGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGTGGCG-----
-NNNAAGGGGGCGGGNNN
 A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCACTAGGTGGCG
CCACGTGGNN---
 A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGGTGGCG
GCCACGTG------
 A C G T A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

MAX::MYC/MA0059.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGTGGCG
ACCACGTGCTC---
 A C G T A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
C T G A A G T C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A G C T G A T C A C G T A C G T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGTGGCG
-CACGTGNT----
 A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCACTAGGTGGCG
CCACGTGGNN---
 A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C A C G T A C G T A C G T

PB0043.1_Max_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGCG
TGACCACGTGGTCGGG
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C A C G T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C T A G
C A G T C A T G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T A T G C T C A G C A T G C A T G