Information for 2-GGGAAGAGCGCACGGC (Motif 4)

A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
Reverse Opposite:
A C T G G T A C A G T C A C T G A C G T A C T G A G T C T A C G A G T C A C G T A G T C C G A T A C G T A T G C A T G C G T A C
p-value:1e-15
log p-value:-3.554e+01
Information Content per bp:1.898
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.1 +/- 30.4bp
Average Position of motif in Background80.5 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGGAAGAGCGCACGGC
TAGGGCAAAGGTCA----
 A C G T A C G T A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGGAAGAGCGCACGGC
GTAGGGCAAAGGTCA----
 A C G T A C G T A C G T A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGGAAGAGCGCACGGC
TGGAACAGMA------
 A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGGAAGAGCGCACGGC--
--NNTTTGCACACGGCCC
 A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C A C G T A C G T
A C G T A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGGAAGAGCGCACGGC
TGGGGCAAAGGTCA----
 A C G T A C G T A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGGAAGAGCGCACGGC
-ATAAAGGCGCGCGAT
 A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GGGAAGAGCGCACGGC
TGGGGAAGGGCM------
 A C G T A C G T A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGGAAGAGCGCACGGC-
-NCANGCGCGCGCGCCA
 A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C A C G T
A C G T G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GGGAAGAGCGCACGGC
-ATAAGGGCGCGCGAT
 A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C
A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:GGGAAGAGCGCACGGC-
---------GCACGTNC
 A C T G A T C G A T C G G T C A C G T A A C T G C G T A A C T G A T G C A C T G A G T C T G C A G T A C A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C