Information for 13-GTAGTTTAAT (Motif 12)

A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T
Reverse Opposite:
C G T A C A G T A C G T C G T A G T C A C G T A A G T C A G C T C G T A T A G C
p-value:1e-10
log p-value:-2.428e+01
Information Content per bp:1.862
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets44.5 +/- 26.9bp
Average Position of motif in Background46.1 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:GTAGTTTAAT
----TTTAAT
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PROP1/MA0715.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTAGTTTAAT--
-TAATTTAATTA
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T
A C G T G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

GSX2/MA0893.1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GTAGTTTAAT----
----NTTAATTAGN
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GTAGTTTAAT---
--ATATTAATTAA
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTAGTTTAAT--
-TAATTTAATTA
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTAGTTTAAT--
-TAATTTAATTA
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T
A C G T G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTAGTTTAAT------
ANTAATTTTATGGCCGN
 A C G T A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GTAGTTTAAT----
----TTTAATTGCN
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTAGTTTAAT-------
NNNTTTTAATTAANNNN
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GTAGTTTAAT---
-----TTAATTAN
 A C T G A C G T C T G A C T A G A C G T A C G T A C G T C G T A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G