Information for 3-CACTAGGGGCAGARCT (Motif 3)

A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
Reverse Opposite:
C G T A A T C G A G C T C A G T A G T C C G A T A T C G A G T C T A G C G T A C G T A C C G A T C T G A A C T G G C A T A T C G
p-value:1e-26
log p-value:-6.070e+01
Information Content per bp:1.691
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.5 +/- 14.2bp
Average Position of motif in Background38.3 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACTAGGGGCAGARCT
TGCCCTNAGGGCA-----
 A C G T A C G T A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACTAGGGGCAGARCT--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACTAGGGGCAGARCT
TGCCCTGAGGGCA-----
 A C G T A C G T A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CACTAGGGGCAGARCT
TGCCCNNAGGGCA-----
 A C G T A C G T A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CACTAGGGGCAGARCT
--GGAGGGGGAA----
 A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CACTAGGGGCAGARCT
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CACTAGGGGCAGARCT-
---AGGGGGCGGGGCTG
 A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T A C G T
A C G T A C G T A C G T C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CACTAGGGGCAGARCT
---TNNGGGCAG----
 A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CACTAGGGGCAGARCT
NNTNAGGGGCGGNNNN
 A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CACTAGGGGCAGARCT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A T G C C G T A A G T C G A C T C G T A A C T G C A T G A T C G A C T G A T G C G C T A T A C G G T C A T C G A A T G C G C A T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T