Information for 5-CCTTGAGTAATGC (Motif 3)

A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
Reverse Opposite:
A T C G A G T C G T C A C G A T C G A T C T G A T A G C C G A T A G T C C G T A T C G A T A C G T A C G
p-value:1e-12
log p-value:-2.925e+01
Information Content per bp:1.748
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.9 +/- 14.3bp
Average Position of motif in Background53.8 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCTTGAGTAATGC
---TGATTGATGA
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCTTGAGTAATGC-
ACCGTGACTAATTNN
 A C G T A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCTTGAGTAATGC--
---TGATTRATGGCY
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTTGAGTAATGC
-GTTGCGCAAT--
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
A C G T T C A G A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCTTGAGTAATGC--
---TGAATTATGCAT
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

NFE2/MA0841.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTTGAGTAATGC
-GATGAGTCATN-
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
A C G T T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCTTGAGTAATGC-
---TGATTTATGGC
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

CEBPG/MA0838.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTTGAGTAATGC
-ATTGCGCAAT--
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
A C G T T C G A G C A T G A C T C T A G G A T C C T A G G A T C G T C A G T C A A G C T A C G T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTTGAGTAATGC
--ATGAGTCAT--
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
A C G T A C G T C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTTGAGTAATGC
---TGAGTCA---
 A T G C A T G C A G C T A C G T A C T G C G T A A C T G A G C T G C T A C G T A A C G T C T A G A T G C
A C G T A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T