Information for 3-AAKGGRAGGCMCMGTG (Motif 5)

C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
Reverse Opposite:
A G T C C G T A G A T C A C T G A C T G A C G T A C T G A G T C A G T C A C G T A G C T A G T C A G T C G T A C A C G T A C G T
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.886
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.6 +/- 23.8bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AAKGGRAGGCMCMGTG
---GGAAANCCCC---
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:2
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AAKGGRAGGCMCMGTG
-AGGGGAATCCCCT--
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AAKGGRAGGCMCMGTG
--GGGAAATCCCCN--
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AAKGGRAGGCMCMGTG
---GGAAATCCCC---
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AAKGGRAGGCMCMGTG
-AGGGGAATCCCCT--
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:AAKGGRAGGCMCMGTG
------AGGCCTAG--
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AAKGGRAGGCMCMGTG
TGGGGAAGGGCM----
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---AAKGGRAGGCMCMGTG
NNTNAGGGGCGGNNNN---
 A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.49
Offset:6
Orientation:forward strand
Alignment:AAKGGRAGGCMCMGTG
------AGGCCTNG--
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AAKGGRAGGCMCMGTG
-GGGGGAATCCCC---
 C G T A C G T A A C T G A C T G A C T G C T G A C G T A A C T G A C T G A G T C G T C A G T A C G T A C C T A G A C G T A C T G
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T