Information for 4-GAATGWTTCAAATATY (Motif 3)

A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T
Reverse Opposite:
C T G A C G T A A C G T C G T A C A G T A C G T C G A T A C T G C G T A T C G A C G T A A G T C G C T A A C G T A C G T G T A C
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.748
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.3 +/- 22.7bp
Average Position of motif in Background16.3 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.61
Offset:8
Orientation:forward strand
Alignment:GAATGWTTCAAATATY------
--------CTAATATTGCTAAA
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.61
Offset:8
Orientation:forward strand
Alignment:GAATGWTTCAAATATY------
--------CTAATATTGCTAAA
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAATGWTTCAAATATY
--CGGTTTCAAA----
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAATGWTTCAAATATY
----NATTCAAAT---
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:GAATGWTTCAAATATY
---------AATTATT
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

BATF::JUN/MA0462.1/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GAATGWTTCAAATATY
GAAATGACTCA------
 A C G T A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T
C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GAATGWTTCAAATATY-
--NNNTTTNTAATACNG
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T A C G T
A C G T A C G T C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GAATGWTTCAAATATY
ATGCATAATTCA------
 A C G T A C G T A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GAATGWTTCAAATATY-
-TATAATTATAATATTC
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T A C G T
A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GAATGWTTCAAATATY-
-TAAGATTATAATACGG
 A C T G G T C A G T C A C A G T T C A G C G A T A C G T G C A T G T A C C G T A C G T A G T C A A C G T G T C A A C G T A G C T A C G T
A C G T G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G