Information for 7-AACAAGATCA (Motif 9)

G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G A T A G T C A G C T C G A T C T A G A G C T A C G T
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.755
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.85%
Number of Background Sequences with motif278.7
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets42.3 +/- 23.2bp
Average Position of motif in Background52.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AACAAGATCA
ATCAAGGTCA
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AACAAGATCA
AAYTAGGTCA
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AACAAGATCA-
---AAGGTCAC
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AACAAGATCA--
--CAAGGHCANV
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AACAAGATCA-
-TCAAGGTCAN
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AACAAGATCA-
-TCAAGGTCAT
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AACAAGATCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AACAAGATCA--
-TCAAGGTCATA
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T A C G T
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AACAAGATCA-----
TATTCAAGGTCATGCGA
 A C G T A C G T G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AACAAGATCA
--TRAGGTCA
 G T C A C T G A G A T C C G T A C T G A A C T G G C T A C G A T G T A C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A