Information for 4-TTGAGTTAAGTTT (Motif 5)

A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
Reverse Opposite:
T G C A T G C A C T G A G T A C G C A T G C A T G T C A C G T A G A T C G C A T G A T C G T C A T C G A
p-value:1e-11
log p-value:-2.670e+01
Information Content per bp:1.461
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 23.0bp
Average Position of motif in Background51.3 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTGAGTTAAGTTT
TAATTCAATGAAGTG-
 A C G T A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTGAGTTAAGTTT---
-TNAGTTTCGATTTTN
 A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G

PB0081.1_Tcf1_1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGAGTTAAGTTT--
NNNTTAGTTAACTNANN
 A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTGAGTTAAGTTT
TTGACTTTT----
 A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTGAGTTAAGTTT--
NTTTTAGTTAACNNAGN
 A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PH0101.1_Lmx1b/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TTGAGTTAAGTTT
AGTTTTTAATTAATTTG
 A C G T A C G T A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTGAGTTAAGTTT---
--NNGTANTGTTTTNC
 A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C

PB0068.1_Sox1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAGTTAAGTTT
NNNTATTGAATTGNNN--
 A C G T A C G T A C G T A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T A C G T

PH0093.1_Lhx3/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGTTAAGTTT
NNTATTTAATTAATTNN
 A C G T A C G T A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
T G C A C A G T C A G T G C T A G C A T G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A A G C T C A G T G C A T A T G C

PH0095.1_Lhx5/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGTTAAGTTT
ANNATTTAATTAATTNN
 A C G T A C G T A C G T A C G T A G C T C A G T C T A G C G T A C T A G G C A T C A G T C G T A C G T A C A T G G A C T A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G