Information for 5-AGGCHTBCTGCCTGCA (Motif 4)

C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G G T A C G T C A A C T G A T C G G T A C C G T A A T C G T A C G C G T A C A G T A C T G A G T C A G T C A C G T
p-value:1e-13
log p-value:-3.085e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.7 +/- 18.1bp
Average Position of motif in Background45.0 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGGCHTBCTGCCTGCA
TGGCAGNCTGCCAG--
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCHTBCTGCCTGCA
AGGCCTNG--------
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGCHTBCTGCCTGCA
TTGGCATGGTGCCA---
 A C G T C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGCHTBCTGCCTGCA
CTTGGCANNNTGCCAA--
 A C G T A C G T C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGGCHTBCTGCCTGCA
CTAGGCCT----------
 A C G T A C G T C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGGCHTBCTGCCTGCA
-GGCGCGCT-------
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.50
Offset:7
Orientation:forward strand
Alignment:AGGCHTBCTGCCTGCA
-------CTGCCCGCA
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

GCM1/MA0646.1/Jaspar

Match Rank:8
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:AGGCHTBCTGCCTGCA--
-------GTACCCGCATN
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.47
Offset:5
Orientation:reverse strand
Alignment:AGGCHTBCTGCCTGCA
-----CACTTCCTGT-
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.46
Offset:1
Orientation:forward strand
Alignment:AGGCHTBCTGCCTGCA
-GTCACGCTCNCTGA-
 C G T A A C T G A C T G G T A C G C T A G C A T A T G C A T G C A C G T A C T G A T G C A G T C A C G T A C T G A G T C C G T A
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T