Information for 3-CAGCGCCGCCTGC (Motif 3)

A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C
Reverse Opposite:
A T C G G T A C C G T A A C T G C T A G A T G C A C T G A C T G A G T C A C T G A G T C A C G T A C T G
p-value:1e-21
log p-value:-5.014e+01
Information Content per bp:1.936
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets45.9 +/- 20.3bp
Average Position of motif in Background34.4 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CAGCGCCGCCTGC----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGCGCCGCCTGC------
TAGCGCCCCCTGGTGGCCA
 A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

POL003.1_GC-box/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAGCGCCGCCTGC-
NAGCCCCGCCCCCN
 A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGCGCCGCCTGC-
--GCTCCGCCCMCY
 A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T
A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGCGCCGCCTGC--
GGTCCCGCCCCCTTCTC
 A C G T A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T A C G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGCGCCGCCTGC--
---SNGCACCTGCHS
 A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T A C G T
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGCGCCGCCTGC------
ANAGTGCCACCTGGTGGCCA
 A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGCCGCCTGC
TGCCTGCGYCMCCTT-
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGCGCCGCCTGC
-GGCCCCGCCCCC
 A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C
A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGCGCCGCCTGC-
----NNCACCTGNN
 A G T C C G T A A C T G A G T C A C T G A G T C A G T C A T C G A G T C A G T C A C G T A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A