Information for 13-TGTCTTGCCAATT (Motif 9)

A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
Reverse Opposite:
G C T A T C G A A G C T A C G T A C T G A C T G A G T C C G T A C G T A A C T G C G T A G T A C G T C A
p-value:1e-11
log p-value:-2.746e+01
Information Content per bp:1.854
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 9.8bp
Average Position of motif in Background17.3 +/- 3.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TGTCTTGCCAATT
---GGTGCCAAGT
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:TGTCTTGCCAATT
---CTTGGCAA--
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TGTCTTGCCAATT
---CGTGCCAAG-
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:TGTCTTGCCAATT
-----TGCCAA--
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TGTCTTGCCAATT
----ATGCCAACC
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

E2F8/MA0865.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGTCTTGCCAATT
TTTCCCGCCAAA-
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGTCTTGCCAATT
CGTCTAGACA---
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

E2F7/MA0758.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTCTTGCCAATT
TTTTCCCGCCAAAA
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGTCTTGCCAATT
-----TGTCANYT
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGTCTTGCCAATT
NNACTTGCCTT--
 A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A C T G A A G C T C A G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T