Information for 1-TGGCTGGGTCCTT (Motif 3)

A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A A C T G A C T G C G T A A T G C A G T C G T A C C G T A A C T G A G T C A G T C C G T A
p-value:1e-13
log p-value:-3.080e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.5 +/- 25.6bp
Average Position of motif in Background55.0 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGGTCCTT
CTGTCTGTCACCT-
 A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGGTCCTT
TWGTCTGV------
 A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGGTCCTT
CTGGCAGNCTGCCA
 A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCTGGGTCCTT
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGCTGGGTCCTT
TGTCTGDCACCT-
 A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGGTCCTT
CTGTCTGG------
 A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTGGGTCCTT
TTGGCATGGTGCCA
 A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TGGCTGGGTCCTT
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGGTCCTT
TTGGCA--------
 A C G T A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGGCTGGGTCCTT
HTGCTGAGTCAT-
 A C G T A C T G T C A G A G T C A C G T A C T G C T A G A T C G A C G T G T A C A G T C A G C T A C G T
G T C A G C A T A C T G G T A C G A C T A C T G G C T A A T C G C A G T G T A C C G T A A G C T A C G T