Information for 3-GCCATGCATC (Motif 13)

A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C
Reverse Opposite:
A T C G G T C A C G A T A C T G G T A C G T C A C G A T A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.196e+01
Information Content per bp:1.847
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.49%
Number of Background Sequences with motif204.6
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets53.2 +/- 25.2bp
Average Position of motif in Background52.6 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCATGCATC--
GYCATCMATCAT
 A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCATGCATC-
RGCCATYAATCA
 A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCATGCATC-
GGCCATAAATCA
 A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCATGCATC-
GCCATAAATCA
 A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCATGCATC-
GGCCATAAATCA
 A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

PB0147.1_Max_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCATGCATC--
GTGCCACGCGACTG
 A C G T A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCATGCATC--
GGCCATAAATCAC
 A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCCATGCATC
CGTGCCAAG----
 A C G T A C G T A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCATGCATC
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCATGCATC
TGCCAA-----
 A C G T A C T G A G T C G T A C G C T A C A G T A C T G A G T C G C T A A C G T A T G C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T