Information for 15-ATGCATAGAGAAT (Motif 17)

C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T
Reverse Opposite:
C G T A A C G T A C G T A G T C A C G T T G A C A C G T C G T A C G A T A C T G A G T C C G T A A C G T
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.932
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.4 +/- 27.3bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----ATGCATAGAGAAT
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGCATAGAGAAT---
ATGCATAATTAATGAG
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGCATAGAGAAT--
ATGCATWATGCATRW
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGCATAGAGAAT
ATGMATATDC---
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGCATAGAGAAT-
ATGAATAATTAATG
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATGCATAGAGAAT---
ATGCATAATTAATGAG
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ATGCATAGAGAAT---
-TTGACCGAGAATTCC
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGCATAGAGAAT
ATGAATATTC---
 C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ATGCATAGAGAAT
ATATGCAAATNNN--
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATGCATAGAGAAT-
BAGTCATANTGAAAG
 A C G T C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G A T A C G T
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G