Information for 6-CCAMARAGDGCAGGST (Motif 8)

A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
Reverse Opposite:
C T G A T A C G T A G C A G T C G A C T A C T G A G T C G T C A A T G C A C G T G A T C G C A T A C G T A C G T C T A G T A C G
p-value:1e-15
log p-value:-3.597e+01
Information Content per bp:1.649
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif180.3
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets36.2 +/- 20.9bp
Average Position of motif in Background55.0 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0008.1_MADS_class/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAMARAGDGCAGGST
CCATATATGG------
 A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCAMARAGDGCAGGST
AAACCACAGAN--------
 A C G T A C G T A C G T A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCAMARAGDGCAGGST
GAAAAAATTGCAAGG-
 A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCAMARAGDGCAGGST
NWAACCACADNN--------
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCAMARAGDGCAGGST
KCCAAAAATAGC-----
 A C G T A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CCAMARAGDGCAGGST
ATGCTAAAAATAGAA----
 A C G T A C G T A C G T A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CCAMARAGDGCAGGST
TTCCATATATGGAA----
 A C G T A C G T A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CCAMARAGDGCAGGST
-CACAGCGGGGGGTC-
 A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CCAMARAGDGCAGGST
CCATATATGGNA----
 A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---CCAMARAGDGCAGGST
AAACCACAGC---------
 A C G T A C G T A C G T A T G C A G T C C G T A T G C A C G T A C T A G G T C A T A C G C A G T A C T G T G A C C T G A C T A G A T C G A T G C A G C T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T