Information for 2-GCAAGRVCAGBGCCCA (Motif 4)

T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
Reverse Opposite:
C G A T A C T G C A T G A C T G T A G C T A C G G T A C A G C T A C T G A C G T A G C T A G T C A G C T A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.751e+01
Information Content per bp:1.684
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.9 +/- 18.6bp
Average Position of motif in Background50.7 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAAGRVCAGBGCCCA
CCAGGAACAG------
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAAGRVCAGBGCCCA
-CAAGGHCANV-----
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCAAGRVCAGBGCCCA----
---CGAACAGTGCTCACTAT
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAAGRVCAGBGCCCA
BTCAAGGTCA-------
 A C G T T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAAGRVCAGBGCCCA
AAGTTCAAGGTCAGC-----
 A C G T A C G T A C G T A C G T T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAAGRVCAGBGCCCA
NTCAAGGTCA-------
 A C G T T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCAAGRVCAGBGCCCA-
---AGGTCANTGACCTN
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A A C G T
A C G T A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAAGRVCAGBGCCCA
CAAAGGTCAG------
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCAAGRVCAGBGCCCA
TCAAGGTCAN------
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAAGRVCAGBGCCCA
CANAGNNCAAAGTCCA
 T A C G G T A C T C G A C T G A C T A G T C G A T G C A A G T C C T G A A C T G A T G C A C T G A G T C G A T C G T A C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A