Information for 10-AGGAAACWTGACT (Motif 12)

C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T
Reverse Opposite:
C G T A A C T G C G A T A T G C G T C A C G A T A T C G A G C T A C G T A G C T A G T C G A T C A C G T
p-value:1e-8
log p-value:-2.000e+01
Information Content per bp:1.786
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif40.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets54.6 +/- 24.8bp
Average Position of motif in Background53.4 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGGAAACWTGACT-
--GWAAYHTGABMC
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGGAAACWTGACT
TCAGNGAGCGTGAC-
 A C G T A C G T C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGAAACWTGACT-
GCAAAACATTACTA
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGGAAACWTGACT-
--GWAAYHTGAKMC
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AGGAAACWTGACT---
-------TTGACTTTT
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGGAAACWTGACT
-----NCGTGACN
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGGAAACWTGACT
------CATGAC-
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGAAACWTGACT------
GAAGTANCACGAATNMRAGT
 A C G T C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGGAAACWTGACT
NACAGGAAAT------
 A C G T A C G T A C G T C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGGAAACWTGACT-
---NNACTTGCCTT
 C G T A C A T G C T A G T C G A C G T A C T G A T A G C G C T A A C G T A T C G C G T A A G T C C G A T A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T