Information for 4-CTCTGTGGTTAAGTGG (Motif 5)

A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C G T C A A G T C A G C T C G A T G T C A C G T A A G T C A G T C C G T A A G T C C G T A C T A G C G T A T C A G
p-value:1e-14
log p-value:-3.348e+01
Information Content per bp:1.768
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.9 +/- 23.7bp
Average Position of motif in Background44.2 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG-----
----NTNNTTAAGTGGNTNAN
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG-----
----NTNNTTAAGTGGTTANN
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.67
Offset:8
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG-
--------TTAAGTGGT
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.66
Offset:8
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG-
--------TTAAGTGGN
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCTGTGGTTAAGTGG
GTCTGTGGTTT-----
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTCTGTGGTTAAGTGG
-GCTGTGGTTT-----
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G
A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG
--CTGTGGTTTN----
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G
A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG
-NNTGTGGTTT-----
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G
A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG-
-------NTCAAGTGGN
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCTGTGGTTAAGTGG
NNHTGTGGTTWN----
 A G T C C G A T A G T C C G A T A C T G C G A T C T A G T C A G G A C T A C G T C G T A C T G A A C T G A C G T A C T G A C T G
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T A C G T A C G T