Information for 5-GGCAGAGCCGGAASCC (Motif 5)

A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
Reverse Opposite:
C T A G C A T G A T G C C G A T A G C T A G T C A G T C T A C G A C T G A G T C G C A T A G T C C G A T A C T G A G T C T A G C
p-value:1e-13
log p-value:-3.167e+01
Information Content per bp:1.768
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.3 +/- 26.8bp
Average Position of motif in Background62.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGAGCCGGAASCC
-DCHCAGCAGGRGGCC
 A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCAGAGCCGGAASCC
--CACAGCAGGGGG--
 A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCAGAGCCGGAASCC
GAGCACAGCAGGACA--
 A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GGCAGAGCCGGAASCC
NNNANTGCAGTGCNNTT----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCAGAGCCGGAASCC
-----GGCGGGAARN-
 A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCAGAGCCGGAASCC
RGKGGGCGGAGC--------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCAGAGCCGGAASCC
-----ANCCGGAAGT-
 A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A C G T A C G T A C G T A C G T A C G T C T G A T G C A T A G C T G A C T A C G T C A G C T G A G C T A T C A G G A C T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GGCAGAGCCGGAASCC
----GGGCGGGAAGG-
 A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGCAGAGCCGGAASCC
--CGGAGC--------
 A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGCAGAGCCGGAASCC
CCACACAGCAGGAGA--
 A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C T G T G A C A G T C C T A G A C T G C T G A C G T A T A C G G T A C G A T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T