Information for 5-AGCCACAGCAGGG (Motif 11)

C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G
Reverse Opposite:
A G T C A G T C A G T C A G C T A C T G A G T C A C G T A C T G A C G T A C T G A C T G A G T C A C G T
p-value:1e-10
log p-value:-2.342e+01
Information Content per bp:1.903
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.4 +/- 26.8bp
Average Position of motif in Background43.5 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.82
Offset:3
Orientation:forward strand
Alignment:AGCCACAGCAGGG--
---CACAGCAGGGGG
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:AGCCACAGCAGGG----
--DCHCAGCAGGRGGCC
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AGCCACAGCAGGG
--DCTCAGCAGG-
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGCCACAGCAGGG--
GAGCACAGCAGGACA
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCCACAGCAGGG--
CCACACAGCAGGAGA
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCCACAGCAGGG--
CCACACAGCAGGAGA
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AGCCACAGCAGGG----
---CACAGCGGGGGGTC
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGCCACAGCAGGG----
--NCGCAGCGGGGGGTC
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGCCACAGCAGGG----
--NCNCAGCGGGGGGTC
 C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCCACAGCAGGG
AAACCACAGAN---
 A C G T C G T A A C T G A G T C G T A C T G C A A G T C C G T A A C T G A G T C C T G A A C T G A C T G C T A G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T