Information for 9-CGGTCACAGTCAA (Motif 8)

A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
Reverse Opposite:
A G C T A C G T A C T G G T C A A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C T G
p-value:1e-11
log p-value:-2.683e+01
Information Content per bp:1.877
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.5 +/- 26.8bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGGTCACAGTCAA--
GGGGTCAAAGTCCAAT
 A C G T A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGGTCACAGTCAA---
CAATCACTGGCAGAAT
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGGTCACAGTCAA
AGGTCAAGGTCA-
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CGGTCACAGTCAA
----CACAGN---
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGGTCACAGTCAA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGGTCACAGTCAA
AGGTCAAGGTCA-
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGGTCACAGTCAA-
---TCAAGGTCATA
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A A C G T
A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGTCACAGTCAA---
--GTCACGCTCNCTGA
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A A C G T A C G T A C G T
A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGTCACAGTCAA
AGAGTCCAAAGTCCA
 A C G T A C G T A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGGTCACAGTCAA
-AGTCACGC----
 A G T C C T A G C T A G A C G T A G T C C G T A A G T C G T C A A C T G A C G T A G T C G T C A C T G A
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T