Information for 9-CTCTTAAAACAGA (Motif 8)

A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
Reverse Opposite:
A C G T A G T C A G C T A C T G A C G T A C G T A C G T A C G T G T C A C T G A C T A G C G T A A C T G
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.4 +/- 18.9bp
Average Position of motif in Background65.9 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAACAGA
GCTCGTAAAAA---
 A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAAACAGA
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAAACAGA
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTAAAACAGA
CCYMATAAAA----
 A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAACAGA
AGTCGTAAAAA---
 A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCTTAAAACAGA
--CCAAAAATAG-
 A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAACAGA
NCYAATAAAA----
 A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTCTTAAAACAGA
-DCYAAAAATAGM
 A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

MEF2C/MA0497.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAACAGA-
ATGCTAAAAATAGAA
 A C G T A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

MEF2A/MA0052.3/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTCTTAAAACAGA
-TCTAAAAATAGA
 A G T C A C G T A G T C A G C T A C G T C G T A C G T A C G T A C G T A A G T C C T G A A C T G C G T A
A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A