Information for 14-CTGCTGCACAGRA (Motif 15)

A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
Reverse Opposite:
A G C T A G C T A G T C A C G T A T C G A C G T A C T G A G T C C G T A A T C G A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.813
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif20.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.2 +/- 26.0bp
Average Position of motif in Background54.3 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGCTGCACAGRA----
-CGAAGCACACAAAATA
 A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CTGCTGCACAGRA
------CACAGN-
 A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGCTGCACAGRA
NATGTTGCAA----
 A C G T A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTGCTGCACAGRA---
------AACAGGAAGT
 A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CTGCTGCACAGRA-
----TGCCCAGNHW
 A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A A C G T
A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGCTGCACAGRA
CAGCTGNT-----
 A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:7
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCACAGRA
CCACCTGTTGCAT----
 A C G T A C G T A C G T A C G T A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGCACAGRA
CAGCAGCTGN------
 A C G T A C G T A C G T A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGCACAGRA----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCACAGRA
TNTCCTGCTGTGNNG--
 A C G T A C G T A C G T A C G T A G T C A C G T T C A G A T G C A C G T A C T G A G T C C G T A T A G C G T C A A C T G C T G A T C G A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T