Information for 13-GAGAACTAGC (Motif 40)

A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C G T A A C T G A C G T A C G T A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.421e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.0 +/- 36.2bp
Average Position of motif in Background39.4 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGAACTAGC
GAGSCCGAGC
 A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAGAACTAGC---
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGAACTAGC----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAACTAGC--
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAGAACTAGC
GTTAACTAGN
 A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GAGAACTAGC
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGAACTAGC
DCYAAAAATAGM
 A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGAACTAGC
GCTAAAAATAGC
 A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGAACTAGC
GGGAGGACNG--
 A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGAACTAGC
KCCAAAAATAGC
 A C G T A C G T A C T G C G T A A C T G C G T A C G T A A G T C A C G T C G T A A C T G A G T C
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C