Information for 14-GRAACTTKTGGSCAAG (Motif 13)

A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
Reverse Opposite:
G T A C C G A T A C G T A T C G A T C G A T G C G T A C G T C A G T C A C G T A C G T A A C T G A C G T A C G T A G T C A G T C
p-value:1e-10
log p-value:-2.486e+01
Information Content per bp:1.751
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 21.0bp
Average Position of motif in Background71.9 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GRAACTTKTGGSCAAG
NNGAGGTTACTNNAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:2
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------GRAACTTKTGGSCAAG
TTAAGAGGAAGTTA--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GRAACTTKTGGSCAAG
GGGTTACTANAGGTCA--
 A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:4
Score:0.48
Offset:-6
Orientation:reverse strand
Alignment:------GRAACTTKTGGSCAAG
AAGATCGGAANTNNNA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----GRAACTTKTGGSCAAG
NACAGGAAAT----------
 A C G T A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---GRAACTTKTGGSCAAG
ACTGAAACCA---------
 A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.47
Offset:8
Orientation:forward strand
Alignment:GRAACTTKTGGSCAAG
--------TTGCCAAG
 A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-GRAACTTKTGGSCAAG
GGTCANYTGAGGWCA--
 A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T A C G T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----GRAACTTKTGGSCAAG
AVCAGGAAGT----------
 A C G T A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---GRAACTTKTGGSCAAG
NNTGGAAANN---------
 A C G T A C G T A C G T A C T G C T A G G T C A C G T A G T A C A C G T G A C T A C G T A C G T A C T G A T C G A T G C T A G C G T C A C G T A A C T G
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T