Information for 4-AGGCAGACTTCAGTGA (Motif 7)

C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T G T A C C G T A G T A C A C G T A C T G G T C A C G T A A C T G C G A T A G T C C G A T A C T G A G T C G T A C C G A T
p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.907
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 18.8bp
Average Position of motif in Background51.4 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGGCAGACTTCAGTGA----
-----TAATTCAATGAAGTG
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGGCAGACTTCAGTGA----
---NNNANTGCAGTGCNNTT
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGCAGACTTCAGTGA
ATGCATAATTCA----
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGGCAGACTTCAGTGA
--CCAGACRSVB----
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGGCAGACTTCAGTGA
--BCAGACWA------
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGGCAGACTTCAGTGA----
----NNCATTCATTCATNNN
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---AGGCAGACTTCAGTGA
AGGTGHCAGACA-------
 A C G T A C G T A C G T C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:AGGCAGACTTCAGTGA
-NGATGACGTCAT---
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
A C G T C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.48
Offset:3
Orientation:forward strand
Alignment:AGGCAGACTTCAGTGA
---CAAAGGTCAG---
 C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGACTTCAGTGA
TAGGGCAAAGGTCA----
 A C G T A C G T C G T A A C T G A C T G A G T C C G T A C T A G C G T A G T A C A C G T A C G T A G T C C G T A A C T G A C G T A C T G C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T