Information for 9-TGGGAGCTTCTGC (Motif 13)

A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
Reverse Opposite:
A C T G G T A C C G T A A C T G C G T A C T G A A C T G A G T C A C G T A G T C A G T C A G T C C G T A
p-value:1e-8
log p-value:-1.932e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.8 +/- 33.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGGGAGCTTCTGC
-CGGAGC------
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGGGAGCTTCTGC
-----GCTTCC--
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGGAGCTTCTGC-
ADGGYAGYAGCATCT
 A C G T A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TGGGAGCTTCTGC--
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C A C G T A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

PB0201.1_Zfp281_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGAGCTTCTGC
NNNATTGGGGGTNTCCT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:6
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------TGGGAGCTTCTGC
RGSMTBCTGGGAAAT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGGAGCTTCTGC
-GGGAATTTCC--
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAGCTTCTGC
CSTGGGAAAD-----
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TGGGAGCTTCTGC--------
-GGYAGCAYDTGCTDCCCNNN
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TGGGAGCTTCTGC
-GGGAATTTCC--
 A C G T A C T G A C T G A C T G C G T A A C T G A G T C A G C T A C G T A G T C C G A T A C T G A G T C
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T