Information for 12-TGGTTGCCAT (Motif 14)

A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T
Reverse Opposite:
C G T A A G C T T C A G A C T G G A T C C G T A G T C A G T A C A G T C T C G A
p-value:1e-10
log p-value:-2.446e+01
Information Content per bp:1.842
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif82.6
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets48.1 +/- 32.7bp
Average Position of motif in Background45.8 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGCCAT----
NNCGTTGCTATGGNN
 A C G T A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TGGTTGCCAT-----
-GGTTGCCATGGCAA
 A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTGCCAT----
NCCGTTGCTANGNGN
 A C G T A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGGTTGCCAT-----
-NGTTGCCATGGCAA
 A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TGGTTGCCAT------
--GTTGCCATGGNAAC
 A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGGTTGCCAT--
CTGTTGCTAGGS
 A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGGTTGCCAT---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTTGCCAT--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RFX2/MA0600.2/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGGTTGCCAT-------
-CGTTGCCATGGCAACG
 A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGGTTGCCAT-------
-CGTTGCCATGGCAACG
 A G C T A C T G A C T G A C G T A C G T C T A G A G T C A G T C C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G