Information for 4-CMSCYMGAGGGCGCCC (Motif 11)

A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C
Reverse Opposite:
A C T G A T C G A C T G A G T C A C T G A G T C A G T C A G T C A G C T A G T C A C G T C T A G A C T G A T G C A C T G A C T G
p-value:1e-11
log p-value:-2.616e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.2 +/- 23.4bp
Average Position of motif in Background27.3 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CMSCYMGAGGGCGCCC----
----TTGGGGGCGCCCCTAG
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CMSCYMGAGGGCGCCC---
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CMSCYMGAGGGCGCCC
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CMSCYMGAGGGCGCCC-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CMSCYMGAGGGCGCCC---
----ATAAGGGCGCGCGAT
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.63
Offset:7
Orientation:forward strand
Alignment:CMSCYMGAGGGCGCCC
-------AGCGCGCC-
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CMSCYMGAGGGCGCCC---
----ATAAAGGCGCGCGAT
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

PLAG1/MA0163.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CMSCYMGAGGGCGCCC
-CCCCCTTGGGCCCC-
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C
A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CMSCYMGAGGGCGCCC
CCGCCCAAGGGCAG--
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CMSCYMGAGGGCGCCC
-TGCCCNGGGGCA---
 A G T C G T A C A T C G A G T C A G T C G T C A A C T G C T G A A C T G A C T G A C T G A G T C A C T G A G T C A T G C G T A C
A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T