Information for 1-GAGAGCCCCG (Motif 3)

A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
Reverse Opposite:
G T A C T A C G T C A G A T C G A C T G A G T C C A G T A T G C A C G T A T G C
p-value:1e-9
log p-value:-2.257e+01
Information Content per bp:1.869
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif342.0
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets49.0 +/- 30.1bp
Average Position of motif in Background52.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAGAGCCCCG--
TTGGGGGCGCCCCTAG
 A C G T A C G T A C G T A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGCCCCG
TTGAGTGSTT--
 A C G T A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGAGCCCCG
--CAGCC---
 A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGCCCCG
GGAAATCCCC-
 A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCCCCG
CTTGAGTGGCT--
 A C G T A C G T A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGAGCCCCG---
---TGCCCAGNHW
 A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGCCCCG
GGAAANCCCC-
 A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCCCCG----
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GAGAGCCCCG
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGAGCCCCG
AAGACCCYYN
 A T C G G T C A T A C G G T C A A C T G A G T C T A G C A G T C A T G C C A T G
T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C