Information for 3-GRAGGKKWCMGSGTCC (Motif 9)

A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A T G C A T C G A G T C A C G T A C T G C G A T T G A C G T A C A G T C A T G C A C G T A G T C A G T C
p-value:1e-8
log p-value:-2.011e+01
Information Content per bp:1.841
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif17.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets34.5 +/- 14.6bp
Average Position of motif in Background50.6 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.57
Offset:8
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC----
--------CAACGTCCGCGG
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC-
--AGGTCACCCTGACCT
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC----
NGAGGTCANNGAGTTCANNN
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC---
---GGGGTCAAAGTCCAAT
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC
GTAGGTCACTGGGTCA
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

ESR1/MA0112.3/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GRAGGKKWCMGSGTCC--
-CAGGTCACCGTGACCTT
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T A C G T
A C G T T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC
-NAGGTCACNNTGACC
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

RXRA::VDR/MA0074.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC-
--GGGTCAACGAGTTCA
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T
A C G T A C G T C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC
-GARTGGTCATCGCCC
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C
A C G T T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C

PPARG/MA0066.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GRAGGKKWCMGSGTCC----
GTAGGTCACGGTGACCTACT
 A C T G C T A G C G T A A T C G A C T G C A G T A C T G C G T A A G T C G T C A A C T G A T G C A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T