Information for 2-CCTCTAAAGA (Motif 5)

A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
Reverse Opposite:
A C G T T A G C A G C T G A C T A G C T C T G A T A C G G C T A C T A G T C A G
p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.652
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif7.53%
Number of Background Sequences with motif1484.6
Percentage of Background Sequences with motif3.10%
Average Position of motif in Targets48.3 +/- 25.7bp
Average Position of motif in Background50.0 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTAAAGA
NSCACTYVAV-
 A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTAAAGA
NNNATTCCTCGAAAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCTCTAAAGA
AGCCACTCAAG-
 A C G T A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCTCTAAAGA
RSCACTYRAG-
 A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTCTAAAGA
AASCACTCAA--
 A C G T A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCTCTAAAGA---
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCTCTAAAGA--
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCTCTAAAGA-
TTTCCTAGAAAGCA
 A C G T A C G T A C G T A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTCTAAAGA
CCAATAAAAA
 A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTCTAAAGA
CCAATAAAAC
 A G T C G A T C C G A T A T G C G A C T C T G A C T G A C T G A A T C G T G C A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C