Information for 3-SKCCTCTSTWMMGGGC (Motif 11)

A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
Reverse Opposite:
C T A G A G T C A G T C A G T C A C G T A C T G C G A T C G T A A T C G C T G A A C T G C G T A A C T G A C T G G T A C A T G C
p-value:1e-10
log p-value:-2.439e+01
Information Content per bp:1.847
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.4 +/- 13.7bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:SKCCTCTSTWMMGGGC--
---------TNNGGGCAG
 A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-SKCCTCTSTWMMGGGC
AGGACGCTGTAAAGGGA
 A C G T A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.49
Offset:2
Orientation:forward strand
Alignment:SKCCTCTSTWMMGGGC
--CCTTTGTT------
 A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:SKCCTCTSTWMMGGGC
-----CTGTTCCTGG-
 A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.48
Offset:2
Orientation:forward strand
Alignment:SKCCTCTSTWMMGGGC
--YCTTTGTTCC----
 A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:SKCCTCTSTWMMGGGC
---GNCTATAAAAGG-
 A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-SKCCTCTSTWMMGGGC
AAGACGCTGTAAAGCGA
 A C G T A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-SKCCTCTSTWMMGGGC
AAGACGCTGTAAAGCGA
 A C G T A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---SKCCTCTSTWMMGGGC
NNGCACCTTTCTCC-----
 A C G T A C G T A C G T A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:SKCCTCTSTWMMGGGC
-NSCACTYVAV-----
 A T C G A C T G A G T C A G T C A C G T A G T C A G C T A T G C A C G T G C T A G T A C G T C A A C T G A C T G A C T G A G T C
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T