Information for 1-CWTTTATKAG (Motif 3)

A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G
Reverse Opposite:
A T G C A C G T G T A C T C G A A G C T C G T A C G T A C T G A C G A T T A C G
p-value:1e-11
log p-value:-2.686e+01
Information Content per bp:1.706
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.29%
Number of Background Sequences with motif516.5
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets51.1 +/- 26.4bp
Average Position of motif in Background50.4 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:CWTTTATKAG-
-TTTTATTRGN
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CWTTTATKAG-
-TTTTATKRGG
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CWTTTATKAG----
NAATTTTACGAGNTNN
 A C G T A C G T A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CWTTTATKAG
NTTTTATTGG
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CWTTTATKAG
NTTTTACGAC
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CWTTTATKAG-
NTTTTACGAGN
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CWTTTATKAG----
ANATTTTACGAGNNNN
 A C G T A C G T A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CWTTTATKAG
-TTTTATTGC
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CWTTTATKAG-
NTTTTATTACN
 A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CWTTTATKAG-
DGWTTTATGRCN
 A C G T A T G C C G T A A G C T A C G T G C A T C T G A A C G T A C T G C G T A T A C G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C