Information for 4-GAATGAATAG (Motif 15)

A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G
Reverse Opposite:
G A T C A G C T G C T A A G C T A C G T G T A C C T G A A C G T G A C T A G T C
p-value:1e-8
log p-value:-1.950e+01
Information Content per bp:1.840
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif91.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets46.1 +/- 26.6bp
Average Position of motif in Background48.7 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----GAATGAATAG-
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GAATGAATAG--
--ATGAATATTC
 A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GAATGAATAG--
--ATGMATATDC
 A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAATGAATAG----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GAATGAATAG
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GAATGAATAG---
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Arid3b/MA0601.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAATGAATAG
NTAATTAATAT
 A C G T A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAATGAATAG
HNRAATCAAT--
 A C G T A C G T A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAATGAATAG
DGATCRATAN
 A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAATGAATAG-------
--ATGAATATTCATGAG
 A C T G C G T A C G T A G A C T A C T G C G T A C T G A C G A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G